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1

ChemInform Abstract: Photoreactions and Dynamics of the Green Fluorescent Protein

Jasper J. van Thor

Journal:

Year:

2009

File:

PDF, 11 KB

2009

2

Infrared protein crystallography

J. Timothy Sage, Yunbin Zhang, John McGeehan, Raimond B.G. Ravelli, Martin Weik, Jasper J. van Thor

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2011

Language:

english

File:

PDF, 1.70 MB

english, 2011

3

Characterization of the extracellular lipase, LipA, of Acinetobacter calcoaceticus BD413 and sequence analysis of the cloned structural gene

Ruben G. Kok, Jasper J. van Thor, Inge M. Nugteren-Roodzant, Marc B. W. Brouwer, Maarten R. Egmond, Clara B. Nudel, Ben Vosman, Klaas J. Hellingwerf

Journal:

Molecular Microbiology

Year:

1995

Language:

english

File:

PDF, 3.04 MB

english, 1995

4

Phototransformation of green fluorescent protein with UV and visible light leads to decarboxylation of glutamate 222

Hellingwerf, Klaas J., Johnson, Louise N., van Thor, Jasper J., Gensch, Thomas

Journal:

Natural Structural Biology

Year:

2001

Language:

english

File:

PDF, 1.05 MB

english, 2001

5

Characterization and transcriptional regulation of the Synechocystis PCC 6803 petH gene, encoding ferredoxin-NADP+oxidoreductase: involvement of a novel type of divergent operator

Jasper J. van Thor, Klaas J. Hellingwerf, Hans C.P. Matthijs

Journal:

Plant Molecular Biology

Year:

1998

Language:

english

File:

PDF, 1.15 MB

english, 1998

6

Characterization and transcriptional regulation of the Synechocystis PCC 6803, petH gene, encoding ferredoxin-NADP+oxidoreductase: involvement of a novel type of divergent operator

Jasper J. van Thor, Klaas J. Hellingwerf, Hans C.P. Matthijs

Journal:

Plant Molecular Biology

Year:

1998

File:

PDF, 9 KB

1998

7

Photoisomerisation quantum yield and non-linear cross-sections with femtosecond excitation of the photoactive yellow protein

Lincoln, Craig N., Fitzpatrick, Ann E., Thor, Jasper J. van

Journal:

Physical Chemistry Chemical Physics

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

8

Salt shock-inducible Photosystem I cyclic electron transfer in Synechocystis PCC6803 relies on binding of ferredoxin:NADP+ reductase to the thylakoid membranes via its CpcD phycobilisome-linker homologous N-terminal domain

Jasper J. van Thor, Robert Jeanjean, Michel Havaux, Klaas A. Sjollema, Francoise Joset, Klaas J. Hellingwerf, Hans C.P. Matthijs

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2000

Language:

english

File:

PDF, 838 KB

english, 2000

9

Ultrafast vibrational dynamics of parallel excited state proton transfer reactions in the Green Fluorescent Protein

Jasper J. van Thor, Craig N. Lincoln, Brendon Kellner, Konstantinos N. Bourdakos, Lee M. Thompson, Michael J. Bearpark, Paul M. Champion, J. Timothy Sage

Journal:

Vibrational Spectroscopy

Year:

2012

Language:

english

File:

PDF, 700 KB

english, 2012

10

Transient Exposure of Hydrophobic Surface in the Photoactive Yellow Protein Monitored with Nile Red

Hendriks, Johnny, Gensch, Thomas, Hviid, Lene, van der Horst, Michael A., Hellingwerf, Klaas J., van Thor, Jasper J.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 384 KB

english, 2002

11

Ground-state proton transfer in the photoswitching reactions of the fluorescent protein Dronpa

Warren, Mark M., Kaucikas, Marius, Fitzpatrick, Ann, Champion, Paul, Timothy Sage, J., van Thor, Jasper J.

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 825 KB

english, 2013

12

Chromophore Structure in the Photocycle of the Cyanobacterial Phytochrome Cph1

van Thor, Jasper J., Mackeen, Mukram, Kuprov, Ilya, Dwek, Raymond A., Wormald, Mark R.

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 372 KB

english, 2006

13

Balance between Ultrafast Parallel Reactions in the Green Fluorescent Protein Has a Structural Origin

van Thor, Jasper J., Ronayne, Kate L., Towrie, Michael, Sage, J. Timothy

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 668 KB

english, 2008

14

Kinetic Evidence for the PsaE-Dependent Transient Ternary Complex Photosystem I/Ferredoxin/Ferredoxin:NADP + Reductase in a Cyanobacterium †

van Thor, Jasper J., Geerlings, Torsten H., Matthijs, Hans C. P., Hellingwerf, Klaas J.

Journal:

Year:

1999

Language:

english

File:

PDF, 132 KB

english, 1999

15

Evidence for “Slow” Electron Injection in Commercially Relevant Dye-Sensitized Solar Cells by vis–NIR and IR Pump–Probe Spectroscopy

Juozapavicius, Mindaugas, Kaucikas, Marius, Dimitrov, Stoichko D., Barnes, Piers R. F., van Thor, Jasper J., O’Regan, Brian C.

Journal:

The Journal of Physical Chemistry C

Year:

2013

Language:

english

File:

PDF, 3.30 MB

english, 2013

16

Mid-Infrared Picosecond Pump−Dump−Probe and Pump−Repump-Probe Experiments to Resolve a Ground-State Intermediate in Cyanobacterial Phytochrome Cph1

van Wilderen, Luuk J. G. W., Clark, Ian P., Towrie, Michael, van Thor, Jasper J.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 433 KB

english, 2009

17

Observation of Multiexponential Pico- to Subnanosecond Electron Injection in Optimized Dye-Sensitized Solar Cells with Visible-Pump Mid-Infrared-Probe Transient Absorption Spectroscopy

Juozapavicius, Mindaugas, Kaucikas, Marius, van Thor, Jasper J., O’Regan, Brian C.

Journal:

The Journal of Physical Chemistry C

Year:

2013

Language:

english

File:

PDF, 2.54 MB

english, 2013

18

Analytical Harmonic Vibrational Frequencies for the Green Fluorescent Protein Computed with ONIOM: Chromophore Mode Character and Its Response to Environment

Thompson, Lee M., Lasoroski, Aurélie, Champion, Paul M., Sage, J. Timothy, Frisch, Michael J., van Thor, Jasper J., Bearpark, Michael J.

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 4.97 MB

english, 2014

19

Light-Induced Proton Release and Proton Uptake Reactions in the Cyanobacterial Phytochrome Cph1 †

van Thor, Jasper J., Borucki, Berthold, Crielaard, Wim, Otto, Harald, Lamparter, Tilman, Hughes, Jon, Hellingwerf, Klaas J., Heyn, Maarten P.

Journal:

Year:

2001

Language:

english

File:

PDF, 146 KB

english, 2001

20

The Short-Lived Signaling State of the Photoactive Yellow Protein Photoreceptor Revealed by Combined Structural Probes

Ramachandran, Pradeep L., Lovett, Janet E., Carl, Patrick J., Cammarata, Marco, Lee, Jae Hyuk, Jung, Yang Ouk, Ihee, Hyotcherl, Timmel, Christiane R., van Thor, Jasper J.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 4.66 MB

english, 2011

21

Characterization of the Photoconversion of Green Fluorescent Protein with FTIR Spectroscopy †

van Thor, Jasper J., Pierik, Antonio J., Nugteren-Roodzant, Inge, Xie, Aihua, Hellingwerf, Klaas J.

Journal:

Year:

1998

Language:

english

File:

PDF, 76 KB

english, 1998

22

Assignments of the Pfr−Pr FTIR Difference Spectrum of Cyanobacterial Phytochrome Cph1 Using 15 N and 13 C Isotopically Labeled Phycocyanobilin Chromophore

van Thor, Jasper J., Fisher, Nicholas, Rich, Peter R.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 182 KB

english, 2005

23

Structural Events in the Photocycle of Green Fluorescent Protein

van Thor, Jasper J., Zanetti, Giulia, Ronayne, Kate L., Towrie, Michael

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 267 KB

english, 2005

24

Formation of the Early Photoproduct Lumi-R of Cyanobacterial Phytochrome Cph1 Observed by Ultrafast Mid-Infrared Spectroscopy

van Thor, Jasper J., Ronayne, Kate L., Towrie, Michael

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 265 KB

english, 2007

25

Protein Structural Dynamics of Photoactive Yellow Protein in Solution Revealed by Pump–Probe X-ray Solution Scattering

Kim, Tae Wu, Lee, Jae Hyuk, Choi, Jungkweon, Kim, Kyung Hwan, van Wilderen, Luuk J., Guerin, Laurent, Kim, Youngmin, Jung, Yang Ouk, Yang, Cheolhee, Kim, Jeongho, Wulff, Michael, van Thor, Jasper J.,

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 2.83 MB

english, 2012

26

Charge transfer in green fluorescent protein

van Thor, Jasper J., Sage, J. Timothy

Journal:

Photochemical & Photobiological Sciences

Year:

2006

Language:

english

File:

PDF, 190 KB

english, 2006

27

Photoreactions and dynamics of the green fluorescent protein

van Thor, Jasper J.

Journal:

Chemical Society Reviews

Year:

2009

Language:

english

File:

PDF, 1.76 MB

english, 2009

28

Photoisomerization and Proton Transfer in the Forward and Reverse Photoswitching of the Fast-Switching M159T Mutant of the Dronpa Fluorescent Protein

Kaucikas, Marius, Tros, Martijn, van Thor, Jasper J.

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

29

Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa

Kaucikas, Marius, Fitzpatrick, Ann, Bryan, Elana, Struve, Abelone, Henning, Robert, Kosheleva, Irina, Srajer, Vukica, Groenhof, Gerrit, Van Thor, Jasper J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 902 KB

english, 2015

30

AIP Conference Proceedings [AIP XXII INTERNATIONAL CONFERENCE ON RAMAN SPECTROSCOPY - Boston (MA) (8–10 August 2010)] - Direct Observations of Low Frequency Vibrational Coherences in wt-GFP

McClelland, Arthur, Demidov, Alexander, Benabbas, Abdelkrim, Sun, Yuhan, Venugopal, Karunakaran, Sage, Timothy, van Thor, Jasper, Champion, Paul, Champion, P. M., Ziegler, L. D.

Year:

2010

Language:

english

File:

PDF, 116 KB

english, 2010

31

Signal to noise considerations for single crystal femtosecond time resolved crystallography of the Photoactive Yellow Protein

van Thor, Jasper J., Warren, Mark M., Lincoln, Craig N., Chollet, Matthieu, Lemke, Henrik Till, Fritz, David M., Schmidt, Marius, Tenboer, Jason, Ren, Zhong, Srajer, Vukica, Moffat, Keith, Graber, Tim

Journal:

Faraday Discussions

Year:

2014

Language:

english

File:

PDF, 974 KB

english, 2014

32

Nanoscale and bio imaging: general discussion

Chapman, Henry, Chergui, Majed, McCoustra, Martin, van Thor, Jasper, Underwood, Jonathan, Woerner, Michael, Bressler, Christian, Smolentsev, Grigory, Küpper, Jochen, Jacobsen, Chris

Journal:

Faraday Discussions

Year:

2014

Language:

english

File:

PDF, 162 KB

english, 2014

33

Combined probes of X-ray scattering and optical spectroscopy reveal how global conformational change is temporally and spatially linked to local structural perturbation in photoactive yellow protein

Kim, Tae Wu, Yang, Cheolhee, Kim, Youngmin, Kim, Jong Goo, Kim, Jeongho, Jung, Yang Ouk, Jun, Sunhong, Lee, Sang Jin, Park, Sungjun, Kosheleva, Irina, Henning, Robert, van Thor, Jasper J., Ihee, Hyotc

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 2.08 MB

english, 2016

34

Kinetic studies on the oxidation of semiquinone and hydroquinone forms of Arabidopsis cryptochrome by molecular oxygen

van Wilderen, Luuk J.G.W., Silkstone, Gary, Mason, Maria, van Thor, Jasper J., Wilson, Michael T.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

35

Wide-dynamic-range kinetic investigations of deep proton tunnelling in proteins

Salna, Bridget, Benabbas, Abdelkrim, Sage, J. Timothy, van Thor, Jasper, Champion, Paul M.

Journal:

Nature Chemistry

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

36

Photocycle populations with femtosecond excitation of crystalline photoactive yellow protein

Hutchison, Christopher D.M., Kaucikas, Marius, Tenboer, Jason, Kupitz, Christopher, Moffat, Keith, Schmidt, Marius, van Thor, Jasper J.

Journal:

Chemical Physics Letters

Year:

2016

Language:

english

File:

PDF, 2.56 MB

english, 2016

37

SPIE Proceedings [SPIE Biomedical Optics 2006 - San Jose, CA (Saturday 21 January 2006)] Genetically Engineered Probes for Biomedical Applications - Ultrafast and low-barrier motions in the photoreactions of the green fluorescent protein

van Thor, Jasper J., Savitsky, Alexander P., Wachter, Rebekka, Towrie, Michael, Ronayne, Kate, Georgiev, Georgi Y., Sage, J. Timothy

Year:

2006

Language:

english

File:

PDF, 549 KB

english, 2006

38

Ultrafast infrared observation of exciton equilibration from oriented single crystals of photosystem II

Kaucikas, Marius, Maghlaoui, Karim, Barber, Jim, Renger, Thomas, van Thor, Jasper J.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

39

Femtosecond Visible Transient Absorption Spectroscopy of Chlorophyll f -Containing Photosystem I

Kaucikas, Marius, Nürnberg, Dennis, Dorlhiac, Gabriel, Rutherford, A. William, van Thor, Jasper J.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

40

Populations and coherence in femtosecond time resolved X-ray crystallography of the photoactive yellow protein

Hutchison, Christopher D.M., van Thor, Jasper J.

Journal:

International Reviews in Physical Chemistry

Year:

2017

Language:

english

File:

PDF, 2.89 MB

english, 2017

41

A split-beam probe-pump-probe scheme for femtosecond time resolved protein X-ray crystallography

van Thor, Jasper J., Madsen, Anders

Journal:

Structural Dynamics

Year:

2015

Language:

english

File:

PDF, 2.30 MB

english, 2015

42

Coherent two-dimensional electronic and infrared crystallography

van Thor, Jasper J.

Journal:

The Journal of Chemical Physics

Year:

2019

Language:

english

File:

PDF, 3.07 MB

english, 2019

43

Excited State Frequencies of Chlorophyll f and Chlorophyll a and Evaluation of Displacement through Franck-Condon Progression Calculations

Zamzam, Noura, van Thor, Jasper

Journal:

Year:

2019

Language:

english

File:

PDF, 1.63 MB

english, 2019

44

Advances and opportunities in ultrafast X-ray crystallography and ultrafast structural optical crystallography of nuclear and electronic protein dynamics

van Thor, Jasper J.

Journal:

Structural Dynamics

Year:

2019

Language:

english

File:

PDF, 2.76 MB

english, 2019

45

Applications and Limits of Time-to-Energy Mapping of Protein Crystal Diffraction Using Energy-Chirped Polychromatic XFEL Pulses

Fadini, Alisia, Reiche, Sven, Nass, Karol, van Thor, Jasper J.

Journal:

Applied Sciences

Year:

2020

File:

PDF, 6.09 MB

2020

46

A Radical-Triggered Reaction Mechanism of the Green-To-Red Photoconversion of EosFP

Fare, Clyde, Yuan, Letong, Cordon-Preciado, Violeta, Michels, Jasper J., Bearpark, Michael John, Rich, Peter Ronald, van Thor, Jasper J.

Journal:

Journal of Physical Chemistry B

Year:

2020

File:

PDF, 1.75 MB

2020

47

Femtosecond visible transient absorption spectroscopy of chlorophyll- f -containing photosystem II

Zamzam, Noura, Rakowski, Rafal, Kaucikas, Marius, Dorlhiac, Gabriel, Viola, Sefania, NÃ¼rnberg, Dennis J., Fantuzzi, Andrea, Rutherford, A. William, van Thor, Jasper J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.05 MB

2020